Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
regABacterial regulatory, Fis family protein. (180 aa)    
Predicted Functional Partners:
regB
His Kinase A domain protein.
 
 0.997
DM82_3386
Cysteine-rich CWC family protein.
       0.681
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.634
arcB_4
Sensory box protein.
 
 
 0.545
evgS
Response regulator.
 
 
 
 0.521
rcsC_1
Response regulator.
 
 
 0.479
fixL_2
Sensory box protein.
 
   
 0.437
basR_1
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
  
 
 
 0.431
rssA_3
HAMP domain protein.
 
 
 
 0.430
qseC_1
HAMP domain protein.
 
 
 
 0.426
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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