DM82_3392 protein (Burkholderia oklahomensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM82_3392

Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein. (356 aa)

Predicted Functional Partners:

rpsN

0.701

psaA

0.654

folE2

0.651

rpmB

0.638

dksA

0.601

cobN

0.554

rpmG

0.543

rlmI

0.527

DM82_4048

0.522

map

0.498

Your Current Organism:

Burkholderia oklahomensis

NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM82_3392	DM82_4048	DM82_3392	DM82_4048	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	Prokaryotic dksA/traR C4-type zinc finger family protein.	0.522
DM82_3392	cobN	DM82_3392	DM82_1282	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	cobalto_cobN: cobaltochelatase, CobN subunit.	0.554
DM82_3392	dksA	DM82_3392	DM82_3391	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.	0.601
DM82_3392	folE2	DM82_3392	DM82_6036	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	GTP cyclohydrolase folE2; Converts GTP to 7,8-dihydroneopterin triphosphate.	0.651
DM82_3392	map	DM82_3392	DM82_1744	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	0.498
DM82_3392	psaA	DM82_3392	DM82_216	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.	0.654
DM82_3392	rlmI	DM82_3392	DM82_3393	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	Met-10+ like-family protein.	0.527
DM82_3392	rpmB	DM82_3392	DM82_307	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.638
DM82_3392	rpmG	DM82_3392	DM82_306	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.543
DM82_3392	rpsN	DM82_3392	DM82_2902	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.701
DM82_4048	DM82_3392	DM82_4048	DM82_3392	Prokaryotic dksA/traR C4-type zinc finger family protein.	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	0.522
cobN	DM82_3392	DM82_1282	DM82_3392	cobalto_cobN: cobaltochelatase, CobN subunit.	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	0.554
dksA	DM82_3392	DM82_3391	DM82_3392	RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	0.601
folE2	DM82_3392	DM82_6036	DM82_3392	GTP cyclohydrolase folE2; Converts GTP to 7,8-dihydroneopterin triphosphate.	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	0.651
map	DM82_3392	DM82_1744	DM82_3392	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	0.498
map	rpmB	DM82_1744	DM82_307	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.451
map	rpmG	DM82_1744	DM82_306	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.495
map	rpsN	DM82_1744	DM82_2902	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.962
psaA	DM82_3392	DM82_216	DM82_3392	Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.	Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.	0.654
psaA	rpmB	DM82_216	DM82_307	Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.	L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.726

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About