Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_34PAP2 superfamily protein. (228 aa)    
Predicted Functional Partners:
pimB
Glycosyl transferases group 1 family protein.
  
    0.692
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
  
 0.642
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
   
 0.511
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
   
 0.511
DM82_4887
Acyltransferase family protein.
   
 0.498
DM82_6122
Hypothetical protein.
  
     0.446
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.436
DM82_3990
Short chain dehydrogenase family protein.
  
 0.418
DM82_3181
lrgA family protein.
  
     0.414
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
   
 0.413
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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