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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgDkdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. (313 aa)    
Predicted Functional Partners:
aldH_1
Aldehyde dehydrogenase family protein.
 
 
 0.990
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.983
gudD-2
Glucar-dehydr: glucarate dehydratase.
 
  
 0.981
garD
galactar-dH20: galactarate dehydratase.
 
  
 0.957
aldH_3
Aldehyde dehydrogenase family protein.
 
 
 0.957
aldH_2
Aldehyde dehydrogenase family protein.
 
 
 0.956
garL
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
    
  0.903
DM82_3415
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.733
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.708
gudP_1
2A0114: D-galactonate transporter family protein.
 
  
 0.668
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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