STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgDkdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. (313 aa)    
Predicted Functional Partners:
aldH_1
Aldehyde dehydrogenase family protein.
 
 
 0.990
gudD-2
Glucar-dehydr: glucarate dehydratase.
 
  
 0.986
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.983
garD
galactar-dH20: galactarate dehydratase.
 
  
 0.969
aldH_3
Aldehyde dehydrogenase family protein.
 
 
 0.955
aldH_2
Aldehyde dehydrogenase family protein.
 
 
 0.954
garL
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
    
  0.902
DM82_3415
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.816
hcaR_1
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
 
    0.659
gudP_1
2A0114: D-galactonate transporter family protein.
 
     0.641
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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