Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_34153-beta hydroxysteroid dehydrogenase/isomerase family protein. (289 aa)    
Predicted Functional Partners:
gnl_1
SMP-30/Gluconolaconase/LRE-like region family protein.
 
     0.880
kdgD
kdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
   
 0.816
garD
galactar-dH20: galactarate dehydratase.
 
   
 0.811
gudD-2
Glucar-dehydr: glucarate dehydratase.
 
   
 0.745
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
 
 0.691
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
 
 0.691
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.678
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.667
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.650
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.625
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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