Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fliSfliS: flagellar protein FliS. (144 aa)    
Predicted Functional Partners:
flgL
flagell_flgL: flagellar hook-associated protein 3.
 
 
 0.987
flaA
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 0.985
fliE
fliE: flagellar hook-basal body complex protein FliE.
 
 
 0.976
fliC
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 0.975
flgL-2
flagell_flgL: flagellar hook-associated protein 3.
 
 
 0.972
flgK
flgK_ends: flagellar hook-associated protein FlgK.
 
 
 0.969
fliG
fliG: flagellar motor switch protein FliG.
 
  
 0.961
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.961
fliK
Flagellar hook-length control FliK family protein.
 
  
 0.959
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
 
 
 0.959
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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