Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_3449traB family protein. (382 aa)    
Predicted Functional Partners:
gsiA_2
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
       0.867
gsiA_3
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
       0.867
dppC
Binding--dependent transport system inner membrane component family protein.
       0.804
DM82_2329
Polysaccharide biosynthesis family protein.
  
  
 0.620
DM82_3722
snoaL-like domain protein.
  
     0.606
yebZ
Copper resistance D family protein.
  
     0.604
dppB_1
Binding--dependent transport system inner membrane component family protein.
       0.592
DM82_1882
Hypothetical protein.
 
     0.586
DM82_1212
Hypothetical protein.
  
     0.572
DM82_1398
LTXXQ motif family protein.
 
     0.541
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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