STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3501Gram-negative porin family protein. (378 aa)    
Predicted Functional Partners:
DM82_5146
Gram-negative porin family protein.
  
  
 
0.879
DM82_4271
Gram-negative porin family protein.
  
  
 
0.878
DM82_458
Gram-negative porin family protein.
  
  
 
0.875
DM82_5066
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein.
  
  
 
0.874
DM82_4800
Gram-negative porin family protein.
  
  
 
0.872
DM82_4665
Gram-negative porin family protein.
  
  
 
0.866
DM82_2199
Gram-negative porin family protein.
  
  
 
0.834
DM82_5112
Gram-negative porin family protein.
  
  
 
0.821
DM82_5052
Gram-negative porin family protein.
  
  
 
0.817
DM82_4780
Gram-negative porin family protein.
  
  
 
0.811
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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