STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3501Gram-negative porin family protein. (378 aa)    
Predicted Functional Partners:
DM82_3597
Hypothetical protein.
  
     0.658
DM82_1514
Putative membrane protein.
  
     0.644
DM82_3300
Thioredoxin family protein.
  
 
   0.599
DM82_598
Putative membrane protein.
  
     0.589
DM82_5444
ompW family protein.
  
     0.572
DM82_5083
Universal stress family protein.
  
     0.546
DM82_6320
Gram-negative porin family protein.
  
  
 
0.546
DM82_6051
Putative membrane protein.
  
     0.545
DM82_3621
vanZ like family protein.
  
     0.543
DM82_4288
Gram-negative porin family protein.
  
  
 
0.538
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.