Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
oprB_1Carbohydrate-selective porin, OprB family protein. (501 aa)    
Predicted Functional Partners:
DM82_4393
Hypothetical protein.
 
     0.718
DM82_2012
Radical SAM superfamily protein.
  
     0.545
DM82_3979
Phosphorylase superfamily protein.
  
     0.544
DM82_3507
Hypothetical protein.
       0.528
DM82_4613
hpnL: membrane family protein.
  
     0.520
DM82_3504
hpnL: membrane family protein.
  
     0.484
mauG_2
Cytochrome c family protein.
  
     0.478
DM82_3987
MMPL family protein.
  
     0.454
DM82_1398
LTXXQ motif family protein.
  
     0.449
DM82_3505
Glycosyl transferase 2 family protein.
  
     0.432
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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