Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
degA_1Bacterial regulatory s, lacI family protein. (339 aa)    
Predicted Functional Partners:
DM82_3540
pfkB carbohydrate kinase family protein.
 
  
 0.952
yihS
N-acylglucosamine 2-epimerase family protein.
 
     0.892
ptsP-2
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
 
 
 
 0.892
ptsP-3
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase.
 
 
 
 0.883
gltB_2
Glutamine amidotransferases class-II family protein.
    
 
 0.849
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
    
 
 0.759
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
    
 
 0.759
lacC
1-PFK: hexose kinase, 1-phosphofructokinase family protein; Belongs to the carbohydrate kinase PfkB family.
   
 
 0.690
ptsH
PTS_HPr_: phosphocarrier, HPr family protein.
 
 
 
 0.538
bglB
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
 
   
 0.494
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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