Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_3563Branched-chain amino acid transport family protein. (100 aa)    
Predicted Functional Partners:
ygaZ
azlC family protein.
 
   
 0.966
pepIP
Alpha/beta hydrolase fold family protein.
       0.624
DM82_4697
TIGR02594 family protein.
  
     0.588
lrp_7
asnC family protein.
       0.536
DM82_5183
Isoprenylcysteine carboxyl methyltransferase family protein.
  
     0.521
DM82_4249
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.
  
     0.491
DM82_5136
metA-pathway of phenol degradation family protein.
  
     0.473
DM82_5146
Gram-negative porin family protein.
  
     0.416
rna
Ribonuclease T2 family protein; Belongs to the RNase T2 family.
  
     0.410
DM82_883
Hypothetical protein.
  
     0.404
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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