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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3591Thiolase, C-terminal domain protein. (124 aa)    
Predicted Functional Partners:
DM82_77
enoyl-CoA hydratase/isomerase family protein.
 
 0.987
fadB
enoyl-CoA hydratase/isomerase family protein.
 
 0.986
fadJ_2
enoyl-CoA hydratase/isomerase family protein.
 
 0.986
fadJ_1
enoyl-CoA hydratase/isomerase family protein.
 
 0.985
paaH_3
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 
 0.804
DM82_2718
Thiolase, N-terminal domain protein.
  
     0.760
paaH_1
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 
 0.715
paaH_2
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 0.697
DM82_4589
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
 0.645
DM82_3592
marR family protein.
       0.615
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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