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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3622Thioredoxin-like [2Fe-2S] ferredoxin family protein. (105 aa)    
Predicted Functional Partners:
nuoE
nuoE_fam: NADH-quinone oxidoreductase, E subunit.
 
 0.873
nuoE-2
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
 
 0.860
nuoM
NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M family protein.
  
  
 0.840
narB_2
FAD binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.766
DM82_2155
Fdh-alpha: formate dehydrogenase, alpha subunit.
  
 
 0.723
narB_1
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.723
DM82_5894
formate-DH-alph: formate dehydrogenase, alpha subunit.
  
 
 0.723
DM82_3623
Prolyl oligopeptidase family protein.
       0.701
DM82_4403
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.692
DM82_3621
vanZ like family protein.
 
     0.677
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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