Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lgrE_1Alpha/beta hydrolase fold family protein. (278 aa)    
Predicted Functional Partners:
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
  
 0.993
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
 
  
 0.993
dhbF_1
AA-adenyl-dom: amino acid adenylation domain protein.
 
  
 0.974
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
 
  
 0.974
dhbF_3
Thioesterase domain protein.
 
  
 0.971
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
 
  
 0.968
DM82_6361
AMP-binding enzyme family protein.
 
  
 0.967
cmdD_1
AA-adenyl-dom: amino acid adenylation domain protein.
 
  
 0.966
dhbF_4
AA-adenyl-dom: amino acid adenylation domain protein.
 
  
 0.958
tycA
AA-adenyl-dom: amino acid adenylation domain protein.
 
  
 0.949
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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