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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3665Phosphoribosyl transferase domain protein. (258 aa)    
Predicted Functional Partners:
DM82_1878
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.925
dprA
dprA: DNA protecting protein DprA.
 
 
 0.895
DM82_308
Radc: DNA repair RadC family protein; Belongs to the UPF0758 family.
 
    0.875
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
  
 0.860
comM
AAA domain family protein.
 
  
 0.840
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
  
    0.835
DM82_5440
Flavin containing amine oxidoreductase family protein.
  
    0.830
DM82_3361
DNA recombination-mediator A family protein.
 
 
 0.804
DM82_2976
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.755
cph2_2
GGDEF: diguanylate cyclase domain protein.
  
  
 0.749
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.