STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_369Transposase family protein. (135 aa)    
Predicted Functional Partners:
DM82_370
Putative transposase.
 
     0.803
DM82_5612
Transposase family protein.
  
     0.758
DM82_3766
Transglutaminase-like superfamily protein.
  
     0.601
DM82_3793
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.516
DM82_3964
Initiator Replication family protein.
  
     0.474
cbaB_2
Cytochrome C oxidase subunit II, periplasmic domain protein.
  
     0.473
DM82_1377
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.454
DM82_1398
LTXXQ motif family protein.
  
     0.424
ltrA
Reverse transcriptase family protein.
     
 0.415
mfpsA_2
Glycosyl transferases group 1 family protein.
  
     0.414
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.