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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3692Putative membrane protein. (177 aa)    
Predicted Functional Partners:
cbiO_2
ABC transporter family protein.
       0.668
DM82_3693
ABC-2 type transporter family protein.
       0.667
DM82_3695
Taurine catabolism dioxygenase TauD, TfdA family protein.
       0.657
DM82_3696
Citrate synthase family protein.
       0.655
DM82_3697
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
       0.655
DM82_3698
Hypothetical protein.
       0.655
dat_3
Dat: 2,4-diaminobutyrate 4-transaminase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.628
fadD_7
AMP-binding enzyme family protein.
       0.621
lysA_2
Hypothetical protein; Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein.
       0.621
DM82_3701
3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein.
       0.621
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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