STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_37Putative beta-mannosidase. (839 aa)    
Predicted Functional Partners:
DM82_38
Hypothetical protein.
 
     0.954
DM82_39
Amino acid--[acyl-carrier-protein] ligase.
 
     0.950
DM82_36
Alpha/beta hydrolase family protein.
 
     0.925
DM82_1288
Hypothetical protein.
   
 0.913
DM82_41
Aminoacyl carrier protein.
 
   
 0.913
DM82_40
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
 
   
 0.892
rihB
Inosine-uridine preferring nucleoside hydrolase family protein.
    
  0.841
lacC
1-PFK: hexose kinase, 1-phosphofructokinase family protein; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.839
pfkB
Putative phosphofructokinase pfkB; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.830
DM82_985
Cellulase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.816
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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