Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydACytochrome d ubiquinol oxidase subunit 1. (531 aa)    
Predicted Functional Partners:
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.999
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.999
DM82_3716
cyd_oper_ybgT: cyd operon protein YbgT.
  
 0.983
DM82_1392
cyd_oper_ybgT: cyd operon protein YbgT.
 
 0.968
cydA_2
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
  
 
0.915
DM82_3719
Hypothetical protein.
       0.867
cyoD
cyoD: cytochrome o ubiquinol oxidase subunit IV.
     
 0.602
cyoD-2
cyoD: cytochrome o ubiquinol oxidase subunit IV.
     
 0.602
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.529
petB
Hypothetical protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.509
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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