Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
spkCKinase domain protein. (848 aa)    
Predicted Functional Partners:
DM82_3759
Hypothetical protein.
 
  
 0.872
DM82_3757
impA-related N-terminal family protein.
 
   
 0.815
DM82_3765
FHA domain protein.
 
  
 0.809
motB_3
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
  
 0.793
DM82_3760
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.771
DM82_3763
Type VI secretion lipofamily protein.
 
  
 0.666
DM82_5200
Bacterial regulatory s, luxR family protein.
   
 
 0.656
DM82_3762
Hypothetical protein.
 
  
 0.645
DM82_22
FHA domain protein.
 
 
 
 0.643
DM82_3101
Double zinc ribbon family protein.
  
 
 0.622
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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