Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
agaAAlpha-galactosidase domain protein. (516 aa)    
Predicted Functional Partners:
DM82_365
Glycosyl hydrolase family 20, catalytic domain protein.
  
  
  0.968
chb
Chitobiase.
  
  
  0.924
DM82_2627
Aldose 1-epimerase family protein.
    
  0.905
DM82_3792
Aman2_put: alpha-1,2-mannosidase family protein.
  
     0.579
DM82_4838
Calcineurin-like phosphoesterase family protein.
 
     0.540
DM82_2943
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.505
DM82_3036
Berberine and berberine like family protein.
  
     0.502
DM82_1631
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.471
macB_1
ABC transporter family protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
    0.417
DM82_4314
Taurine catabolism dioxygenase TauD, TfdA family protein.
  
     0.403
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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