Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_3760Intracellular multiplication and macrophage-killing family protein. (1209 aa)    
Predicted Functional Partners:
motB_3
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
 
 0.973
DM82_3759
Hypothetical protein.
 
  
 0.963
DM82_3762
Hypothetical protein.
 
  
 0.950
DM82_3763
Type VI secretion lipofamily protein.
 
  
 0.947
DM82_4633
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
 
 0.882
DM82_3757
impA-related N-terminal family protein.
 
  
 0.877
motB_2
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
 
 0.875
DM82_3756
Hypothetical protein.
 
  
 0.872
DM82_4980
Hypothetical protein.
 
  
 0.855
DM82_4619
Hypothetical protein.
 
  
 0.854
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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