Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_3763Type VI secretion lipofamily protein. (172 aa)    
Predicted Functional Partners:
motB_3
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
  
 0.977
DM82_3759
Hypothetical protein.
 
  
 0.960
DM82_3762
Hypothetical protein.
 
  
 0.960
DM82_3760
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.947
DM82_4978
Type VI secretion lipofamily protein.
  
  
 
0.913
DM82_2788
Type VI secretion lipofamily protein.
  
  
 
0.905
DM82_6385
25-like lysozyme family protein.
 
  
 0.905
motB_2
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
  
 0.902
DM82_4631
Type VI secretion lipofamily protein.
     
  0.900
DM82_3756
Hypothetical protein.
 
  
 0.893
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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