Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
hpaBHypothetical protein; 4-hydroxyphenylacetate 3-hydroxylase C terminal family protein. (494 aa)    
Predicted Functional Partners:
pvcB
Paerucumarin biosynthesis protein PvcB.
  
 
 0.973
DM82_3791
Pyoverdine/dityrosine biosynthesis family protein.
     
 0.784
rutF_1
Flavin reductase like domain protein.
 
  
 0.675
hpaH
hpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.663
hpaC
hpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component.
 
  
 0.650
asnB-2
asn_synth_AEB: asparagine synthase.
       0.639
rutF_2
Flavin reductase like domain protein.
 
  
 0.616
hpcB_2
Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein.
  
  
 0.608
qorA_3
Zinc-binding dehydrogenase family protein.
       0.567
hpcD
5-carboxymethyl-2-hydroxymuconate isomerase family protein.
 
  
 0.536
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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