STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnKCP_lyasePhnK: phosphonate C-P lyase system protein PhnK. (258 aa)    
Predicted Functional Partners:
phnG
phnG_redo: phosphonate C-P lyase system protein PhnG.
 
 
 0.999
DM82_3827
Bacterial phosphonate metabolism family protein.
 
 
 0.999
phnH
phnH_redo: phosphonate C-P lyase system protein PhnH.
 
 
 0.998
phnJ
Protein phnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 0.998
phnL
CP_lyasePhnL: phosphonate C-P lyase system protein PhnL.
 
 
0.996
DM82_3831
Amidohydrolase family protein.
 
  
 0.982
phnD
3A0109s03R: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding family protein.
 
  
 0.953
phnF
C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF.
 
  
 0.947
DM82_3823
Amidohydrolase family protein.
 
  
 0.942
phnN
Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
 
  
 0.935
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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