Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_383Hypothetical protein. (77 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.956
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.525
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
     
 0.470
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
     
 0.470
dinG_3
Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein.
  
  
 0.441
ispB
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
  
 0.404
ispA_1
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
  
 0.404
ispA_2
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
  
 0.404
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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