Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cdaRCarbohydrate diacid regulator. (400 aa)    
Predicted Functional Partners:
garK
Glycerate kinase 2; Belongs to the glycerate kinase type-1 family.
 
  
 0.766
pyk-3
Pyruv_kin: pyruvate kinase; Belongs to the pyruvate kinase family.
       0.587
DM82_4874
Bacterial regulatory, Fis family protein.
 
     0.552
glxK_1
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
 
  
 0.492
fruA
PTS system fructose-specific EIIBC component.
  
   
 0.469
stp
Stp: serine transporter family protein.
  
     0.455
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.429
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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