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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3897Methyltransferase domain protein. (257 aa)    
Predicted Functional Partners:
DM82_3895
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase family protein.
  
  
 0.920
serB_2
HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, IB family protein.
  
 
 0.881
DM82_3894
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase family protein.
  
  
 0.810
DM82_3899
Glycosyl transferase 2 family protein.
  
    0.756
DM82_3898
Putative queuine/archaeosine tRNA-ribosyltransferase.
       0.752
flgK
flgK_ends: flagellar hook-associated protein FlgK.
  
    0.682
flgK-2
flgK_ends: flagellar hook-associated protein FlgK.
  
    0.682
flgL
flagell_flgL: flagellar hook-associated protein 3.
  
  
 0.681
flgL-2
flagell_flgL: flagellar hook-associated protein 3.
  
  
 0.681
DM82_4612
Nucleotidyl transferase family protein.
  
  
 0.662
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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