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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaK_42A0115: MFS transporter, aromatic acid:H+ symporter family protein. (451 aa)    
Predicted Functional Partners:
benB
benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit.
 
     0.613
benA
benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit.
 
     0.599
lvr_3
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.597
benC
Benzoate 1,2-dioxygenase electron transfer component.
 
   
 0.581
pcaB
protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase.
 
     0.576
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
 
     0.544
rhmT_1
Sugar (and other) transporter family protein.
  
     0.499
catC
Muco_delta: muconolactone delta-isomerase.
 
     0.489
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
       0.484
catA
Catechol_proteo: catechol 1,2-dioxygenase.
 
     0.477
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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