STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaDprotocat_pcaD: 3-oxoadipate enol-lactonase. (261 aa)    
Predicted Functional Partners:
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
  
 0.998
DM82_5108
Carboxymuconolactone decarboxylase family protein.
  
 0.977
pcaI
3-oxoadipate CoA-transferase subunit A.
  
 
 0.967
catC
Muco_delta: muconolactone delta-isomerase.
 
 
 0.966
pcaJ
3-oxoadipate CoA-transferase subunit B.
  
 
 0.958
pcaB
protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.944
catD_2
Alpha/beta hydrolase fold family protein.
 
  
0.923
DM82_1523
Carboxymuconolactone decarboxylase family protein.
 
  
 0.919
DM82_3985
Putative 4-carboxymuconolactone decarboxylase domain protein.
   
 
 0.900
DM82_4589
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.778
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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