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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaJ3-oxoadipate CoA-transferase subunit B. (218 aa)    
Predicted Functional Partners:
pcaI
3-oxoadipate CoA-transferase subunit A.
 0.999
scoA
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit.
 
 0.999
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
  
 
 0.953
catD_2
Alpha/beta hydrolase fold family protein.
  
 
 0.938
DM82_2719
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein.
  
 
 0.921
pcaF
pcaF: 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
paaJ-2
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
pcaB
protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase.
  
  
 0.657
pobA
FAD binding domain protein.
     
 0.580
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
  
  
 0.558
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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