Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gnl_2Strictosidine synthase family protein. (313 aa)    
Predicted Functional Partners:
gntK
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
    
 0.928
DM82_5143
FAD binding domain protein.
 
 
 0.928
ghrB
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.910
ghrB_2
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
  
 
 0.910
aldH_2
Aldehyde dehydrogenase family protein.
 
   
 0.833
DM82_533
Lactonase, 7-bladed beta-propeller family protein.
  
  
 0.562
DM82_5576
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
     0.530
garD
galactar-dH20: galactarate dehydratase.
 
   
 0.502
DM82_4912
Amidohydrolase family protein.
 
   
 0.493
kdgD
kdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
     0.484
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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