STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptGPutative permease YjgP/YjgQ family protein. (382 aa)    
Predicted Functional Partners:
lptF
Putative permease YjgP/YjgQ family protein.
 
 0.999
lptB_4
ABC transporter family protein.
 
 
 0.986
DM82_3751
Lipopolysaccharide-assembly, LptC-related family protein.
 
 
 0.952
cbiX
Cobalamin (Vitamin B12) biosynthesis CbiX protein.
  
    0.824
lptD
Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.822
DM82_399
DNA polymerase III chi subunit, HolC family protein.
 
     0.713
pepA
Hypothetical protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.704
DM82_1514
Putative membrane protein.
 
   
 0.690
sspB
Stringent starvation B family protein.
  
    0.666
arnT
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
 
   
 0.642
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.