STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptGPutative permease YjgP/YjgQ family protein. (382 aa)    
Predicted Functional Partners:
lptF
Putative permease YjgP/YjgQ family protein.
 
 0.999
lptB_4
ABC transporter family protein.
 
 
 0.998
DM82_3751
Lipopolysaccharide-assembly, LptC-related family protein.
 
 
 0.972
mlaE_1
Hypothetical protein.
 
  
 0.911
ccmA-4
ccmA: heme ABC exporter, ATP-binding protein CcmA.
   
 
 0.883
mntB
ABC 3 transport family protein.
     
 0.882
mlaE_2
Hypothetical protein.
    
 0.882
DM82_2344
ABC-2 type transporter family protein.
    
  0.852
kpsM
ABC-2 type transporter family protein.
    
  0.852
modA
modA: molybdate ABC transporter, periplasmic molybdate-binding protein.
     
 0.850
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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