Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
shcHopene_cyclase: squalene-hopene cyclase. (668 aa)    
Predicted Functional Partners:
DM82_4236
Squalene/phytoene synthase family protein.
 
 
 0.973
DM82_3979
Phosphorylase superfamily protein.
 
   
 0.972
hpnD-2
hpnD: squalene synthase HpnD.
 
  
 0.905
DM82_4148
Radical SAM superfamily protein.
 
   
 0.871
DM82_4152
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
 
 0.830
DM82_3987
MMPL family protein.
 
     0.806
DM82_4150
Glycosyl transferase 2 family protein.
 
     0.804
DM82_2012
Radical SAM superfamily protein.
 
   
 0.785
DM82_1927
Fatty acid hydroxylase superfamily protein.
  
 
 0.780
DM82_4613
hpnL: membrane family protein.
 
     0.765
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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