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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4004Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (232 aa)    
Predicted Functional Partners:
exbD_4
Biopolymer transport ExbD/TolR family protein.
 
 
 0.948
tolQ_3
motA/TolQ/ExbB proton channel family protein.
 
 
 0.945
exbD_3
Biopolymer transport ExbD/TolR family protein.
 
 
 0.908
DM82_4008
Tetratricopeptide repeat family protein.
 
 
   0.872
DM82_2192
tonB dependent receptor family protein.
 
 
 0.830
cirA_1
tonB dependent receptor family protein.
 
 
 0.814
fhuF
fe_III_red_FhuF: siderophore-iron reductase FhuF.
  
  
 0.802
bfrD
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
 
 0.798
cirA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
 
 0.778
fhuA_3
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
 
 0.773
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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