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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tldD_2Modulator of DNA gyrase family protein. (477 aa)    
Predicted Functional Partners:
DM82_4016
Modulator of DNA gyrase family protein.
 
    0.955
pmbA
Modulator of DNA gyrase family protein.
 
 
 0.907
yejB_2
Binding--dependent transport system inner membrane component family protein.
       0.802
yejE_2
Binding--dependent transport system inner membrane component family protein.
       0.802
nikE-2
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
       0.802
oppA_1
Bacterial extracellular solute-binding s, 5 Middle family protein.
       0.779
cirA_1
tonB dependent receptor family protein.
 
     0.499
DM82_4017
Hypothetical protein.
       0.482
acrB_3
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
     
 0.476
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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