Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tldD_2Modulator of DNA gyrase family protein. (477 aa)    
Predicted Functional Partners:
DM82_4016
Modulator of DNA gyrase family protein.
 
    0.969
pmbA
Modulator of DNA gyrase family protein.
 
 
 0.916
yejB_2
Binding--dependent transport system inner membrane component family protein.
       0.809
yejE_2
Binding--dependent transport system inner membrane component family protein.
       0.809
nikE-2
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
       0.809
oppA_1
Bacterial extracellular solute-binding s, 5 Middle family protein.
       0.786
cirA_1
tonB dependent receptor family protein.
 
     0.506
DM82_4017
Hypothetical protein.
       0.482
acrB_3
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
     
 0.471
egtB
egtB_TIGR03440: ergothioneine biosynthesis EgtB family protein.
 
   
 0.430
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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