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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmsB4Fe-4S dicluster domain protein. (252 aa)    
Predicted Functional Partners:
dmsA_2
Molybdopterin oxidoreductase Fe4S4 domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.999
DM82_4035
DMSO reductase anchor subunit family protein.
 
 
 0.998
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit.
 
 0.987
narB_2
FAD binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.975
DM82_5895
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
 0.964
DM82_5133
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.944
DM82_5639
Flavodoxin family protein.
    
 0.919
sir_2
Nitrite and sulphite reductase 4Fe-4S domain protein.
    
 0.910
tauD_1
Taurine catabolism dioxygenase TauD, TfdA family protein.
   
 
  0.909
tfdA
Taurine catabolism dioxygenase TauD, TfdA family protein.
   
 
  0.909
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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