Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phaZPHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein. (411 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase.
 
   
 0.765
phbC_2
Poly-beta-hydroxybutyrate polymerase family protein.
 
   
 0.698
phaR
PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.568
nrdE_1
Ribonucleotide reductase, barrel domain protein.
       0.545
DM82_996
Alpha/beta hydrolase fold family protein.
  
   
 0.480
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.451
DM82_4808
Patatin-like phospholipase family protein.
  
     0.451
phbB-1
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   
 0.417
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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