Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
thcD_2Pyridine nucleotide-disulfide oxidoreductase family protein. (757 aa)    
Predicted Functional Partners:
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
 
  
 0.719
gltB_2
Glutamine amidotransferases class-II family protein.
  
  
 0.686
nirD
nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit.
 
  
 0.650
nirD-2
nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit.
  
  
 0.634
hmp
Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
  
  
 0.630
andAb_2
Rieske [2Fe-2S] domain protein.
 
  
 0.608
rubA
Rubredoxin family protein.
  
 
 0.605
DM82_493
Rubredoxin family protein.
  
 
 0.605
DM82_5653
Hypothetical protein.
  
 
 0.605
DM82_4048
Prokaryotic dksA/traR C4-type zinc finger family protein.
       0.590
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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