Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
luxO_1AAA domain family protein. (322 aa)    
Predicted Functional Partners:
rpoN-2
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.794
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.793
phoP_1
Bacterial regulatory, Fis family protein.
 
    
 0.650
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.636
DM82_2994
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.554
glnL
Sensory box protein.
  
 
 0.545
DM82_5804
Hypothetical protein.
  
 
 0.543
evgS
Response regulator.
  
 
 0.525
fliM
fliM_switch: flagellar motor switch protein FliM.
  
  
 0.507
DM82_3884
Surface presentation of antigens family protein.
  
  
 0.487
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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