STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4086mltA-interacting MipA family protein. (275 aa)    
Predicted Functional Partners:
DM82_4089
Hypothetical protein.
  
     0.709
DM82_3583
phospholipase/Carboxylesterase family protein.
  
     0.676
epsM
Type II secretion system (T2SS), M family protein.
  
     0.593
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.582
DM82_2168
Hypothetical protein.
  
     0.553
DM82_3644
Hypothetical protein.
  
     0.547
DM82_2329
Polysaccharide biosynthesis family protein.
  
     0.531
DM82_3667
Hypothetical protein.
  
     0.482
DM82_4087
Hypothetical protein.
       0.471
DM82_3721
Lipid A 3-O-deacylase family protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
     0.468
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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