Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hmuV_1ABC transporter family protein. (277 aa)    
Predicted Functional Partners:
DM82_410
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.988
feuC_1
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.916
feuC_2
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.916
fhuB
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.911
btuF_2
Periplasmic binding family protein.
 
 
 0.906
btuB
tonB dependent receptor family protein.
 
   
 0.789
cobS
Cobalamin-5-phosphate synthase family protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
     
 0.775
cobC
ribazole_cobC: alpha-ribazole phosphatase.
     
 0.770
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
     
 0.769
btuF_1
Periplasmic binding family protein.
 
 
 0.726
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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