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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4110ABC transporter family protein. (455 aa)    
Predicted Functional Partners:
DM82_4109
Type II secretion system (T2SS), F family protein.
 
  
 0.977
DM82_4108
Type II secretion system (T2SS), F family protein.
 
  
 0.967
DM82_4111
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
  
 0.963
pulD_3
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
 
  
 0.950
cpaB-2
pilus_cpaB: Flp pilus assembly protein CpaB.
 
  
 0.917
DM82_1052
Type II secretion system (T2SS), F family protein.
 
  
 0.909
DM82_1051
Type II secretion system (T2SS), F family protein.
 
  
 0.908
DM82_4112
tadE-like family protein.
 
  
 0.908
DM82_4114
Flp pilus-assembly TadE/G-like family protein.
 
  
 0.888
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB.
 
  
 0.879
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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