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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4122Hypothetical protein. (402 aa)    
Predicted Functional Partners:
DM82_4123
Hypothetical protein.
 
    
0.850
yfdH
Glycosyl transferase 2 family protein.
 
  
 0.813
DM82_4126
gtrA-like family protein.
       0.745
DM82_4125
Methyltransferase domain protein.
       0.730
DM82_4114
Flp pilus-assembly TadE/G-like family protein.
  
     0.692
DM82_4113
tadE-like family protein.
  
     0.637
DM82_4112
tadE-like family protein.
  
     0.589
pulD_3
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
  
     0.549
cpaB-2
pilus_cpaB: Flp pilus assembly protein CpaB.
  
     0.533
DM82_4121
flp/Fap pilin component family protein.
 
     0.524
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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