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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yibH_2hlyD secretion family protein. (304 aa)    
Predicted Functional Partners:
aaeB_3
Fusaric acid resistance family protein.
 
  
 0.944
oprM_11
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.917
macB_1
ABC transporter family protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.876
DM82_4141
Hypothetical protein.
       0.768
aaeB_2
Fusaric acid resistance family protein.
 
  
 0.714
aaeB_1
Aluminum activated malate transporter family protein.
 
  
 0.713
oprM_2
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.643
slyA
marR family protein.
 
  
 0.641
oprM
Outer membrane protein oprM.
 
 0.633
oprM_4
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.633
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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