Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nodD2_3Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
aaeB_3
Fusaric acid resistance family protein.
 
     0.764
yibH_2
hlyD secretion family protein.
 
     0.575
rutF_2
Flavin reductase like domain protein.
 
     0.556
syrM1_3
lysR substrate binding domain protein.
  
     0.541
DM82_4141
Hypothetical protein.
       0.513
oprM_11
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
  
    0.495
DM82_4595
HD domain protein.
  
    0.413
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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