Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DM82_4148Radical SAM superfamily protein. (386 aa)    
Predicted Functional Partners:
ispH-2
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.905
shc
Hopene_cyclase: squalene-hopene cyclase.
 
   
 0.871
DM82_3987
MMPL family protein.
 
   
 0.826
DM82_2012
Radical SAM superfamily protein.
 
  
 0.809
DM82_4150
Glycosyl transferase 2 family protein.
 
   
 0.806
DM82_3979
Phosphorylase superfamily protein.
 
   
 0.787
DM82_4152
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.782
hpnD-2
hpnD: squalene synthase HpnD.
 
   
 0.776
DM82_3504
hpnL: membrane family protein.
 
     0.745
DM82_4613
hpnL: membrane family protein.
 
     0.729
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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