STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4151Hypothetical protein. (535 aa)    
Predicted Functional Partners:
DM82_5804
Hypothetical protein.
   
 
 0.583
ftsK_1
ftsK/SpoIIIE family protein.
    
 
 0.530
ftsK_2
ftsK/SpoIIIE family protein; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.530
DM82_1701
Hypothetical protein.
   
   0.476
DM82_3657
Hypothetical protein; Prc: C-terminal processing peptidase family protein; Belongs to the peptidase S41A family.
  
 
 0.473
btuB
tonB dependent receptor family protein.
    
   0.465
DM82_6126
tonB dependent receptor family protein.
    
   0.465
DM82_2192
tonB dependent receptor family protein.
    
 
 0.427
cirA_1
tonB dependent receptor family protein.
    
 
 0.427
DM82_4249
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.
    
 
 0.427
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.