STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irtAABC transporter family protein. (618 aa)    
Predicted Functional Partners:
potA_1
Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 
0.832
irtB_2
ABC transporter family protein.
 
    
0.831
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
 
 0.726
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.721
dhbE_2
Salicyl_syn: salicylate synthase.
 
  
 0.720
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
 0.716
ppsE_2
AMP-binding enzyme family protein.
 
 0.698
soxS_1
Helix-turn-helix domain protein.
 
    0.681
DM82_831
dnaJ domain protein.
  
 
 0.667
DM82_83
ABC transporter family protein.
  
 
0.662
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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