Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4193Hypothetical protein. (267 aa)    
Predicted Functional Partners:
DM82_5934
Polysaccharide biosynthesis family protein.
  
     0.707
DM82_2329
Polysaccharide biosynthesis family protein.
  
     0.685
DM82_553
PRC-barrel domain protein.
  
     0.677
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.675
hcaE
Rieske [2Fe-2S] domain protein.
  
     0.660
DM82_1657
Tetratricopeptide repeat family protein.
 
     0.645
yebZ
Copper resistance D family protein.
 
     0.621
DM82_5103
Hypothetical protein; uvrD-like helicase C-terminal domain protein.
 
     0.604
DM82_4089
Hypothetical protein.
  
     0.594
DM82_6104
Glycosyl transferases group 1 family protein.
  
   
 0.594
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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